species:   Bodot
pid:       PID1091
parent:    Bd-milR41
paralog:   b
locus:     SACU01000027.1:9129-9228
matures:   ['AGAUAUGUUGUAGAGCGCGG', 'GCGCGUUCGAGCAUAAUUUG']
srr:       SRR8374850
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram SACU01000027.1:9129-9228

1 out of bounds
4 alignments
3 proper strand
2 stranded perfect matches

              ***********************                          ***********************              
CGUUGAGCCGAGAUAUGUUGUAGAGCGCGGUCGGGCGAUGAGAAUUUUCGCGUACGAUAUUCCCGUCCGAUCGCGCGUUCGAGCAUAAUUUGGCAGUUAG
......((((((.((((((..((.(((((((((((((..(.((((..(((....))).)))))))))))))))))).))..)))))).))))))......
----------AGAUAUGUUGUAGAGCGCGG---------------------------------------------------------------------- l=20 a=0 c
------------------------------------------------------------------------GCGCGUUCGAGCAUAAUUUG-------- l=20 a=0 c*
-----------------------------------------------------------------UCCGAUCGCGCGUUCGAGCAU-------------- l=21 a=1 ma
----------------GUUGUAGAGCGCGGUCGGGCG--------------------------------------------------------------- l=21 a=0 ma*

-----------------------------------------------------------------UCCGAUCGCGCGUUCGAGC---------------- l=19 a=1 
-----------------------------------------------------------------UCCGAUCGCGCGUUCGAGCg--------------- l=20 a=1 
-----------------------------------------------------------------UCCGAUCGCGCGUUCGAGCAU-------------- l=21 a=1 (ma)

mb-01011
ax-1011011
ku-01
ss-100110111100
fn-001
